※Citation

For publication of results please cite the following articles:

GPS-Lipid: a robust tool for the prediction of multiple lipid modification sites.
Yubin Xie, Yueyuan Zheng, Hongyu Li, Xiaotong Luo, Zhihao He, Shuo Cao, Yi Shi, Qi Zhao, Yu Xue, Zhixiang Zuo and Jian Ren*.
Scientific Reports. 2016; 6: 28249

[Abstract] [Full Text] [PDF]


CSS-Palm 2.0: an updated software for palmitoylation sites prediction. Jian Ren, Longping Wen, Xinjiao Gao, Changjiang Jin, Yu Xue and Xuebiao Yao.
Protein Engineering, Design and Selection. 2008; 21(11): 639-644

[Abstract] [Full Text] [PDF]




※ GPS-Lipid/CSS-Palm cited by >180 publications :

1.         Fukata Y, et al. Nature Reviews Neuroscience.2010;11(3):161-175.[PMID: 20168314]

2.         Chamberlain LH, et al. Physiological Reviews.2015;95(2):341-376.[PMID: 25834228]

3.         Brigidi GS, et al. Nature Neuroscience.2014;17(4):522-U571.[PMID: 24562000]

4.         Blank M, et al. Molecular Biology and Evolution.2012;29(11):3553-3561.[PMID: 22718912]

5.         Hoffmann FG, et al. Molecular Biology and Evolution.2012;29(7):1735-1745.[PMID: 22319164]

6.         Schwarze K, et al. Molecular Biology and Evolution.2014;31(10):2708-2721.[PMID: 25061084]

7.         Foe IT, et al. Cell Host & Microbe.2015;18(4):501-511.[PMID: 26468752]

8.         Frenal K, et al. Cell Host & Microbe.2010;8(4):343-357.[PMID: 20951968]

9.         Hicks SW, et al. Cell Host & Microbe.2011;10(1):9-20.[PMID: 21767808]

10.         Batistic O, et al. Cell Research.2012;22(7):1155-1168.[PMID: 22547024]

11.       Dejanovic B, et al. Plos Biology.2014;12(7).[PMID: 25025157]

12.       Beard RS, et al. Nature Communications.2016;7.[PMID: 27653213]

13.       De Henau S, et al. Nature Communications.2015;6.[PMID: 26621324]

14.       Peyretaillade E, et al. Nature Communications.2012;3.[PMID: 23072807]

15.       Ra EA, et al. Nature Communications.2016;7.[PMID: 27216961]

16.       Misra JR, et al. Developmental Cell.2016;39(2):254-266.[PMID: 27746048]

17.       Young FB, et al. Progress in Neurobiology.2012;97(2):220-238.[PMID: 22155432]

18.       Kemp BJ, et al. Current Biology.2012;22(23):2213-2220.[PMID: 23141108]

19.       Liu JJ, et al. Current Biology.2013;23(11):993-998.[PMID: 23684977]

20.       Bosmans F, et al. Proceedings of the National Academy of Sciences of the United States of America.2011;108(50):20213-20218.[PMID: 22123950]

21.       Fredericks GJ, et al. Proceedings of the National Academy of Sciences of the United States of America.2014;111(46):16478-16483.[PMID: 25368151]

22.       Santos JM, et al. Proceedings of the National Academy of Sciences of the United States of America.2016;113(26):7183-7188.[PMID: 27303037]

23.       Dowal L, et al. Blood.2011;118(13):E62-E73.[PMID: 21813449]

24.       Betz C, et al. Journal of Cell Biology.2013;203(4):563-574.

25.       Matakatsu H, et al. Journal of Cell Biology.2017;216(1):265-277.

26.       Van Dolah DK, et al. Biological Psychiatry.2011;69(11):1035-1042.[PMID: 21216391]

27.       Pan Y, et al. Nucleic Acids Research.2014;42(18):11570-11588.[PMID: 25232094]

28.       Blicher T, et al. Current Opinion in Structural Biology.2010;20(3):335-341.[PMID: 20403684]

29.       George J, et al. Elife.2015;4.[PMID: 25884247]

30.       Wang SH, et al. Elife.2015;4.[PMID: 26371552]

31.       Mill P, et al. Plos Genetics.2009;5(11).[PMID: 19956733]

32.       Saleem AN, et al. Plos Genetics.2010;6(6).[PMID: 20548961]

33.       Beck JR, et al. Plos Pathogens.2010;6(9).[PMID: 20844581]

34.       Couto D, et al. Plos Pathogens.2016;12(8).[PMID: 27494702]

35.       Frenal K, et al. Plos Pathogens.2014;10(11).[PMID: 25393004]

36.       Garrison E, et al. Plos Pathogens.2012;8(11).[PMID: 23209419]

37.       Katris NJ, et al. Plos Pathogens.2014;10(4).[PMID: 24743791]

38.       Yount JS, et al. Current Opinion in Chemical Biology.2013;17(1):27-33.[PMID: 23332315]

39.       Chesarino NM, et al. Bmc Biology.2014;12.[PMID: 25371237]

40.       Boavida LC, et al. Plant Physiology.2013;163(2):696-712.[PMID: 23946353]

41.       Matsui H, et al. Plant Physiology.2014;166(1):327-336.[PMID: 24958714]

42.       Qi D, et al. Plant Physiology.2014;164(1):340-351.

43.       Yang W, et al. Molecular & Cellular Proteomics.2010;9(1):54-70.[PMID: 19801377]

44.       Upadhyay S, et al. Mbio.2016;7(6).[PMID: 27879337]

45.       Schapansky J, et al. Human Molecular Genetics.2014;23(16):4201-4214.[PMID: 24682598]

46.       Bisht NC, et al. New Phytologist.2011;190(1):35-48.[PMID: 21175635]

47.       Hemsley PA. New Phytologist.2015;205(2):476-489.[PMID: 25283240]

48.       Truernit E, et al. Development.2012;139(7):1306-1315.[PMID: 22395740]

49.       Goldston AM, et al. Trends in Parasitology.2014;30(7):350-360.[PMID: 24954795]

50.       Weckwerth P, et al. Plant Cell and Environment.2015;38(3):544-558.[PMID: 25052912]

51.       Lai JB, et al. Journal of Experimental Botany.2015;66(20):6345-6353.[PMID: 26160582]

52.       Tapken W, et al. Journal of Experimental Botany.2015;66(6):1573-1586.[PMID: 25725094]

53.       Tom C, et al. Acs Chemical Biology.2013;8(1):46-57.[PMID: 23215442]

54.       Roberts BJ, et al. Journal of Cell Science.2014;127(17):3782-3793.[PMID: 25002405]

55.       Tsugama D, et al. Biochimica Et Biophysica Acta-Molecular Cell Research.2012;1823(12):2254-2260.[PMID: 23058975]

56.       Saja S, et al. Neurobiology of Disease.2010;40(1):135-145.[PMID: 20206262]

57.       Frohlich M, et al. Cell Death & Disease.2014;5.[PMID: 24525733]

58.       Ganesan L, et al. Scientific Reports.2017;7.[PMID: 28112226]

59.       Hettenhausen C, et al. Scientific Reports.2016;6.[PMID: 26733237]

60.       Morrison E, et al. Scientific Reports.2015;5.[PMID: 26111759]

61.       Xie YB, et al. Scientific Reports.2016;6.[PMID: 27306108]

62.       Bayyareddy K, et al. Journal of Proteome Research.2012;11(12):5843-5855.[PMID: 23153095]

63.       Yagoub D, et al. Journal of Proteome Research.2015;14(12):5038-5047.[PMID: 26554900]

64.       Gehmlich K, et al. Heart Rhythm.2010;7(10):1446-1453.

65.       Mathews EA, et al. Genetics.2012;192(4):1315-+.[PMID: 23051648]

66.       Miclaus M, et al. Genetics.2011;189(4):1271-+.[PMID: 21926304]

67.       Sanders SS, et al. Plos Computational Biology.2015;11(8).[PMID: 26275289]

68.       Anderson-White BR, et al. Cellular Microbiology.2011;13(1):18-31.[PMID: 20698859]

69.       Cabrera A, et al. Traffic.2012;13(10):1335-1350.[PMID: 22759070]

70.       Polonais V, et al. Traffic.2011;12(3):287-300.[PMID: 21143563]

71.       Lee HJ, et al. Cell Communication and Signaling.2010;8.[PMID: 20509869]

72.       Frietze KM, et al. Journal of Virology.2010;84(21):11310-11322.[PMID: 20739542]

73.       Selariu A, et al. Journal of Virology.2012;86(16):8614-8624.[PMID: 22674980]

74.       Chen L, et al. Journal of Biological Chemistry.2013;288(18):13136-13144.

75.       Giancaspero TA, et al. Journal of Biological Chemistry.2013;288(40):29069-29080.[PMID: 23946482]

76.       Howe V, et al. Journal of Biological Chemistry.2015;290(46):27533-27544.[PMID: 26434806]

77.       Jeffries O, et al. Journal of Biological Chemistry.2010;285(43):33307-33314.[PMID: 20693285]

78.       Jeffries O, et al. Journal of Biological Chemistry.2012;287(2):1468-1477.[PMID: 22084244]

79.       Kawano Y, et al. Journal of Biological Chemistry.2014;289(27):19079-19088.[PMID: 24841201]

80.       Kumari R, et al. Journal of Biological Chemistry.2013;288(44):32004-32019.[PMID: 24045944]

81.       Majeau N, et al. Journal of Biological Chemistry.2009;284(49):33915-33925.[PMID: 19783655]

82.       Montigny C, et al. Journal of Biological Chemistry.2014;289(49):33850-33861.[PMID: 25301946]

83.       Montpellier C, et al. Journal of Biological Chemistry.2011;286(16):13954-13965.[PMID: 21343309]

84.       Mukherjee A, et al. Journal of Biological Chemistry.2014;289(20):14351-14359.[PMID: 24692558]

85.       Oku S, et al. Journal of Biological Chemistry.2013;288(27):19816-19829.[PMID: 23687301]

86.       Shipston MJ. Journal of Biological Chemistry.2011;286(11):8709-8716.[PMID: 21216969]

87.       Swayne LA, et al. Journal of Biological Chemistry.2010;285(32):24977-24986.[PMID: 20529862]

88.       Tian LJ, et al. Journal of Biological Chemistry.2010;285(31):23954-23962.[PMID: 20507996]

89.       Tokmakov AA, et al. Journal of Biological Chemistry.2012;287(32):27106-27116.[PMID: 22674579]

90.       Tulloch LB, et al. Journal of Biological Chemistry.2011;286(41):36020-36031.[PMID: 21868384]

91.       Yang X, et al. Journal of Biological Chemistry.2011;286(41):36152-36160.[PMID: 21878636]

92.       Zuckerman DM, et al. Journal of Biological Chemistry.2011;286(21):19014-19023.

93.       Shipston MJ. Journal of General Physiology.2014;143(6):659-678.[PMID: 24821965]

94.       Gauthier-Kemper A, et al. Molecular Biology of the Cell.2014;25(21):3284-3299.[PMID: 25165142]

95.       Meissner D, et al. Molecular Biology of the Cell.2010;21(14):2425-2433.[PMID: 20505074]

96.       Gutgemann SA, et al. European Journal of Immunology.2015;45(4):1258-1269.[PMID: 25545687]

97.       McFie PJ, et al. Biochimica Et Biophysica Acta-Molecular and Cell Biology of Lipids.2014;1841(9):1318-1328.[PMID: 24953780]

98.       Rodriguez-Asiain A, et al. Biochimica Et Biophysica Acta-Molecular and Cell Biology of Lipids.2011;1811(12):1124-1135.[PMID: 22020259]

99.       Tejero J, et al. Biochimica Et Biophysica Acta-Molecular and Cell Biology of Lipids.2016;1861(5):391-401.[PMID: 26928591]

100.       Merino MC, et al. Plos Neglected Tropical Diseases.2014;8(7).[PMID: 25058047]

101.     Zoltewicz SJ, et al. Asn Neuro.2012;4(6).[PMID: 23127255]

102.     Pinner AL, et al. Schizophrenia Research.2016;177(1-3):78-87.[PMID: 26876311]

103.     Droge J, et al. International Journal of Biological Sciences.2014;10(7):689-701.[PMID: 25013378]

104.     Kono M, et al. Frontiers in Bioscience-Landmark.2013;18:982-992.

105.     Deng Q, et al. Molecular and Cellular Endocrinology.2015;408(C):23-32.[PMID: 25676569]

106.     Groeneweg FL, et al. Molecular and Cellular Endocrinology.2012;350(2):299-309.[PMID: 21736918]

107.     Singh A, et al. Cell Calcium.2015;58(2):139-146.[PMID: 25933832]

108.     Jerng HH, et al. Frontiers in Cellular Neuroscience.2014;8.[PMID: 24723849]

109.     Schroeder GN, et al. Infection and Immunity.2015;83(10):3989-4002.[PMID: 26216420]

110.     Park JS, et al. Molecular Pharmacology.2012;82(5):784-794.[PMID: 22837314]

111.     Clark GB, et al. Plant Science.2014;225:107-116.[PMID: 25017166]

112.     Rowland O, et al. Plant Science.2012;193:28-38.[PMID: 22794916]

113.     Kolesinski P, et al. Plant Molecular Biology.2011;77(4-5):447-459.[PMID: 21922322]

114.     Ye SF, et al. Plant Molecular Biology.2009;70(3):311-325.[PMID: 19263224]

115.     Li SY, et al. Journal of Chemical Information and Modeling.2015;55(9):2015-2025.[PMID: 26274591]

116.     Kanchiswamy CN, et al. Bmc Genomics.2013;14.[PMID: 24192013]

117.     Colquhoun DR, et al. Proteomics.2015;15(12):2066-2077.[PMID: 25914232]

118.     Lineiro E, et al. Proteomics.2016;16(17):2363-2376.[PMID: 27329576]

119.     Toledo A, et al. Proteomics.2015;15(21):3662-3675.[PMID: 26256460]

120.     Lesniewicz K, et al. Bmc Plant Biology.2012;12.[PMID: 23102437]

121.     Zhou LA, et al. Bmc Plant Biology.2010;10.[PMID: 21192820]

122.     Tokmakov AA. Frontiers in Microbiology.2014;5.[PMID: 24999341]

123.     Kamath KS, et al. Journal of Proteomics.2011;75(1):127-144.[PMID: 21983556]

124.     Scifo E, et al. Journal of Proteomics.2015;123:42-53.[PMID: 25865307]

125.     Thomas PV, et al. Journal of Proteomics.2014;103:178-193.[PMID: 24713161]

126.     Wagner G, et al. Journal of Proteomics.2013;82:52-63.[PMID: 23466310]

127.     Yano J, et al. Journal of Proteomics.2013;78:113-122.[PMID: 23146917]

128.     Vartak N, et al. Biophysical Journal.2014;106(1):93-105.[PMID: 24411241]

129.     Sever L, et al. Developmental and Comparative Immunology.2014;42(2):211-219.[PMID: 24060503]

130.     Wang Z, et al. Investigative Ophthalmology & Visual Science.2015;56(13):8349-8360.[PMID: 26747763]

131.     Gui JS, et al. Frontiers in Plant Science.2015;6.[PMID: 26483819]

132.     Mani B, et al. Frontiers in Plant Science.2015;6.[PMID: 26697042]

133.     Mohanta TK, et al. Frontiers in Plant Science.2015;6.[PMID: 26734045]

134.     Srivastava V, et al. Frontiers in Plant Science.2016;7.[PMID: 27148305]

135.     Zauber H, et al. Frontiers in Plant Science.2014;5.[PMID: 24672530]

136.     Meyer S, et al. Transfusion.2014;54(12):3198-3207.[PMID: 24845979]

137.     Blank M, et al. Plos One.2011;6(9).[PMID: 21949889]

138.     Britzen-Laurent N, et al. Plos One.2010;5(12).[PMID: 21151871]

139.     Chaki M, et al. Plos One.2014;9(10).[PMID: 25333472]

140.     Davies WIL, et al. Plos One.2012;7(12).[PMID: 23251480]

141.     Hellewell AL, et al. Plos One.2014;9(6).[PMID: 24910990]

142.     Henry SC, et al. Plos One.2014;9(4).[PMID: 24751652]

143.     Hrdinka M, et al. Plos One.2012;7(5).[PMID: 22662118]

144.     Kumari B, et al. Plos One.2014;9(2).[PMID: 24586628]

145.     Lefebvre M, et al. Plos One.2013;8(9).[PMID: 24086735]

146.     Liu W, et al. Plos One.2014;9(6).[PMID: 24887436]

147.     Lorestani A, et al. Plos One.2010;5(8).[PMID: 20808817]

148.     Markussen T, et al. Plos One.2013;8(7).[PMID: 23922911]

149.     Rausch F, et al. Plos One.2012;7(10).[PMID: 23094088]

150.     Segal-Salto M, et al. Plos One.2016;11(1).[PMID: 26731412]

151.     Xue Y, et al. Plos One.2010;5(6).[PMID: 20585580]

152.     Zhang XB, et al. Plos One.2013;8(1).[PMID: 23349782]

153.     Lorenzo MM, et al. Journal of General Virology.2012;93:733-743.[PMID: 22238237]

154.     Chavda B, et al. Expert Opinion on Drug Discovery.2014;9(9):1005-1019.[PMID: 24967607]

155.     Planey SL, et al. Expert Opinion on Drug Discovery.2010;5(2):155-164.[PMID: 22822915]

156.     Slowinska M, et al. Biology of Reproduction.2014;91(5).[PMID: 25253733]

157.     Aicart-Ramos C, et al. Biochimica Et Biophysica Acta-Biomembranes.2011;1808(12):2981-2994.[PMID: 21819967]

158.     Caers J, et al. Insect Biochemistry and Molecular Biology.2016;70:73-84.[PMID: 26690928]

159.     Meyer JM, et al. Insect Biochemistry and Molecular Biology.2011;41(8):563-571.[PMID: 21457782]

160.     Frenal K, et al. International Journal for Parasitology.2014;44(2):121-131.[PMID: 24184909]

161.     Boucher LE, et al. Journal of Structural Biology.2015;190(2):93-114.[PMID: 25764948]

162.     Tsugama D, et al. Febs Letters.2012;586(6):693-698.[PMID: 22449965]

163.     Schuch JB, et al. American Journal of Medical Genetics Part B-Neuropsychiatric Genetics.2016;171(3):479-491.[PMID: 26892727]

164.     Awan FM, et al. Infection Genetics and Evolution.2014;27:355-365.[PMID: 25120100]

165.     Shipston MJ. Biochemical Society Transactions.2013;41:67-71.[PMID: 23356260]

166.     Caballero MC, et al. Biochimica Et Biophysica Acta-Proteins and Proteomics.2016;1864(4):400-408.[PMID: 26825284]

167.     Hernandez JL, et al. Molecular Biosystems.2016;12(6):1799-1808.[PMID: 27030425]

168.     Raimondo F, et al. Molecular Biosystems.2015;11(6):1708-1716.[PMID: 25926002]

169.     Emmer BT, et al. Eukaryotic Cell.2011;10(3):455-463.[PMID: 21193548]

170.     Hu LL, et al. Biochimie.2011;93(3):489-496.[PMID: 21075167]

171.     Pokotylo I, et al. Biochimie.2014;96:144-157.[PMID: 23856562]

172.     Dietrich MA, et al. Fish & Shellfish Immunology.2014;41(2):389-401.[PMID: 25251775]

173.     Lorestani A, et al. Cytoskeleton.2012;69(12):1069-1085.[PMID: 23027733]

174.     Taylor EB, et al. Molecular Immunology.2015;66(2):126-138.[PMID: 25771179]

175.     de Oliveira SSC, et al. Bmc Microbiology.2015;15.[PMID: 26415499]

176.     Zerenturk EJ, et al. Bioscience Reports.2014;34:107-+.

177.     Gu LQ, et al. Proteomics Clinical Applications.2016;10(12):1159-1177.[PMID: 27666938]

178.     Caers J, et al. General and Comparative Endocrinology.2016;235:142-149.[PMID: 27288635]

179.     Giltrow E, et al. General and Comparative Endocrinology.2011;173(3):483-490.

180.     Hansen M, et al. Neurochemical Research.2013;38(6):1236-1251.[PMID: 23417431]

181.     Caers J, et al. Journal of Insect Physiology.2016;93-94:105-111.[PMID: 27677695]

182.     Taketa DA, et al. Immunogenetics.2015;67(10):605-623.[PMID: 26359175]

183.     Fu L, et al. Chemometrics and Intelligent Laboratory Systems.2014;135:208-212.

184.     Cui X, et al. Parasitology.2012;139(8):998-1004.[PMID: 22405293]

185.     Horna-Terron E, et al. International Journal of Molecular Sciences.2014;15(12):23501-23518.[PMID: 25526565]

186.     Patnaik BB, et al. International Journal of Molecular Sciences.2013;14(10):20744-20767.[PMID: 24132157]

187.     Wang XB, et al. Protein Engineering Design & Selection.2009;22(11):707-712.[PMID: 19783671]

188.     Xue Y, et al. Protein Engineering Design & Selection.2011;24(3):255-260.

189.     Murungi E, et al. Parasitology International.2014;63(2):341-348.[PMID: 24269876]

190.     Shen CJ, et al. Virology Journal.2009;6.[PMID: 19575796]

191.     Wu Y, et al. Virology Journal.2011;8.[PMID: 21609474]

192.     Abe H, et al. Gene.2012;494(2):174-180.[PMID: 22197655]

193.     Shi SP, et al. Journal of Molecular Graphics & Modelling.2013;40:125-130.[PMID: 23419766]

194.     Butt AM, et al. Molecular Biology Reports.2012;39(2):1359-1369.[PMID: 21617949]

195.     Zuo R, et al. Molecular Biology Reports.2013;40(3):2645-2662.[PMID: 23242656]

196.     Rausch F, et al. Journal of Molecular Modeling.2014;20(11).[PMID: 25381619]

197.     Abe H, et al. Journal of Molecular Evolution.2013;77(5-6):260-267.[PMID: 24193891]

198.     Albisetti A, et al. Experimental Parasitology.2015;155:49-57.[PMID: 25982029]

199.     Tetaud E, et al. Experimental Parasitology.2016;166:97-107.[PMID: 27060615]

200.     Hao JW, et al. Virus Genes.2014;49(1):58-67.[PMID: 24771495]

201.     Li YX, et al. Protein and Peptide Letters.2011;18(2):186-193.[PMID: 21054270]

202.     Charollais J, et al. Molecular Membrane Biology.2009;26(1-2):55-66.[PMID: 19085289]

203.     Planey SL, et al. Molecular Membrane Biology.2009;26(1-2):14-31.[PMID: 19191172]

204.     Ghosh R, et al. Journal of Plant Interactions.2015;10(1):158-166.

205.     Farani TF, et al. Genetics and Molecular Research.2015;14(1):483-491.[PMID: 25729982]

206.     Huang GH, et al. Mini-Reviews in Organic Chemistry.2015;12(6):468-480.

207.     Fang CY, et al. Chinese Journal of Analytical Chemistry.2014;42(4):616-622.

208.     Bhardwaj A, et al. Animal Biotechnology.2012;23(2):71-88.[PMID: 22537057]

209.     Prajer M, et al. Folia Biologica-Krakow.2015;63(3):195-213.[PMID: 26462332]

210.     Graebert A, et al. Trace Elements and Electrolytes.2010;27(3):140-144.

211.     Xiang Y, et al. Legume Research.2015;38(3):313-320.

212.     Einarsson E, et al. Msphere.2016;1(2).[PMID: 27303715]

213.     Qin YM, et al. Big Data Research.2015;2(1):12-18.

214.     Rao KH, et al. Msphere.2016;1(4).[PMID: 27504497]

215.     Shipston MJ. Frontiers in Physiology.2014;5.[PMID: 25140154]

216.     Spang A. Membranes.2015;5(1):84-98.

217.     Swartzlander DB, et al. (2012) In Doetsch, P. W.

218.     Wright MH, et al. Acs Infectious Diseases.2016;2(6):427-441.[PMID: 27331140]