Lipid Modification Database
Tag Content
LipidDB ID
LipidDB-9606-00549
Entry Name
UniProt Accession
Theoretical PI
4.76
Molecular Weight
24267.14
Genbank Protein ID
Genbank Nucleotide ID
Protein Name
Ras-related protein Rab-3D
Protein Synonyms/Alias
Gene Name
RAB3D
Gene Synonyms/Alias
GOV; RAB16;
Created Date
15-JUL-1999
 Lipid Modification Sites 
 Position   Sequence Form   Peptide   References   Modification Type 
217
Canonical
PAPQPSSCSC*****
[1]
S-Geranylgeranylation
219
Canonical
PQPSSCSC*******
[1]
S-Geranylgeranylation
Organism
Homo sapiens (Human)
NCBI Taxa ID
9606
Reference
[1] Hendrix A, Maynard D, Pauwels P, Braems G, Denys H, Van den Broecke R, LambertJ, Van Belle S, Cocquyt V, Gespach C, Bracke M, Seabra MC, Gahl WA, De Wever O,Westbroek W. Effect of the secretory small GTPase Rab27B on breast cancer growth,invasion, and metastasis. J Natl Cancer Inst. 2010 Jun 16;102(12):866-80. doi:10.1093/jnci/djq153. Epub 2010 May 18.[PMID:20484105]
Functional Description
Protein transport. Probably involved in regulated exocytosis (By similarity).
Sequence Annotation
Nucleotide-binding: 29 37 GTP.
Nucleotide-binding: 77 81 GTP.
Nucleotide-binding: 135 138 GTP.
Nucleotide-binding: 165 167 GTP.
Motif: 51 59 Effector region.
Modified residue: 2 2 N-acetylalanine.
Modified residue: 219 219 Cysteine methyl ester.
Protein Length
219 AA.
Protein Sequence
(Canonical)
MASAGDTQAG PRDAADQNFD YMFKLLLIGN SSVGKTSFLF RYADDSFTPA FVSTVGIDFK  60
VKTVYRHDKR IKLQIWDTAG QERYRTITTA YYRGAMGFLL MYDIANQESF AAVQDWATQI  120
KTYSWDNAQV ILVGNKCDLE DERVVPAEDG RRLADDLGFE FFEASAKENI NVKQVFERLV  180
DVICEKMNES LEPSSSSGSN GKGPAVGDAP APQPSSCSC                         219
FASTA
(Canonical)
>LipidDB-9606-00549|O95716
MASAGDTQAGPRDAADQNFDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFK
VKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQI
KTYSWDNAQVILVGNKCDLEDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFERLV
DVICEKMNESLEPSSSSGSNGKGPAVGDAPAPQPSSCSC
Gene Ontology
GO:0070062; C:extracellular vesicular exosome; IDA:UniProtKB
GO:0005739; C:mitochondrion; IEA:Ensembl
GO:0005886; C:plasma membrane; IEA:UniProtKB-KW
GO:0030133; C:transport vesicle; IEA:Ensembl
GO:0042588; C:zymogen granule; IEA:Ensembl
GO:0005525; F:GTP binding; IEA:UniProtKB-KW
GO:0003924; F:GTPase activity; TAS:ProtInc
GO:0031489; F:myosin V binding; IPI:UniProtKB
GO:0006887; P:exocytosis; IEA:UniProtKB-KW
GO:0006184; P:GTP catabolic process; TAS:GOC
GO:0018125; P:peptidyl-cysteine methylation; IEA:Ensembl
GO:0015031; P:protein transport; IEA:UniProtKB-KW
GO:0017157; P:regulation of exocytosis; IEA:Ensembl
GO:0007264; P:small GTPase mediated signal transduction; IEA:InterPro
Interpro
InterPro; IPR027417; P-loop_NTPase
InterPro; IPR005225; Small_GTP-bd_dom
InterPro; IPR001806; Small_GTPase
InterPro; IPR003579; Small_GTPase_Rab_type
Pfam
Pfam; PF00071; Ras;
SMART
SMART; SM00175; RAB;
PROSITE
PROSITE; PS51419; RAB;
PRINTS
PRINTS; PR00449; RASTRNSFRMNG;