Lipid Modification Database
Tag Content
LipidDB ID
LipidDB-3702-01080
Entry Name
UniProt Accession
Theoretical PI
6.16
Molecular Weight
21888.86
Genbank Protein ID
Genbank Nucleotide ID
Protein Name
Ras-related protein RABF1
Protein Synonyms/Alias
AtRABF1; Ras-related protein Ara-6; Ras-related protein Rab5C; AtRab5C;
Gene Name
RABF1
Gene Synonyms/Alias
ARA-6; RAB5C; At3g54840; F28P10.180;
Created Date
05-APR-2011
 Lipid Modification Sites 
 Position   Sequence Form   Peptide   References   Modification Type 
2
Canonical
******MGCASSLPD
[1]
N-Myristoylation
3
Canonical
*****MGCASSLPDR
[1]
S-Palmitoylation
Organism
Arabidopsis thaliana (Mouse-ear cress)
NCBI Taxa ID
3702
Reference
[1] Ueda T, Yamaguchi M, Uchimiya H, Nakano A. Ara6, a plant-unique novel type RabGTPase, functions in the endocytic pathway of Arabidopsis thaliana. EMBO J. 2001 Sep 3;20(17):4730-41.[PMID:11532937]
Functional Description
Endosomal protein probably involved in endocytosis. Probably not involved in vacuolar trafficking.
Sequence Annotation
Nucleotide-binding: 40 47 GTP.
Nucleotide-binding: 89 93 GTP.
Nucleotide-binding: 147 150 GTP.
Nucleotide-binding: 177 178 GTP.
Motif: 62 70 Effector region.
Protein Length
202 AA.
Protein Sequence
(Canonical)
MGCASSLPDR NSGTLSGLSN SENAVPADAK NLRVKLVLLG DSGVGKSCIV LRFVRGQFDA  60
TSKVTVGASF LSQTIALQDS TTVKFEIWDT AGQERYSALA PLYYRGAGVA VIVYDITSPE  120
SFKKAQYWVK ELQKHGSPDI VMALVGNKAD LHEKREVPTE DGMELAEKNG MFFIETSAKT  180
ADNINQLFEE IGKRLPRPAP SS                                           202
MGCASSLPDR NSGTLSGLSN SENAVPADAK NLRVKLVLLG DSGVGKSCIV LRFVRGQFDA  60
TSKVTVGASF LSQTIALQDS TTVKFEIWDT AGQERYSALA PLYYRGAGVA VIVYDITSPE  120
SFKKAQYWVK ELQKHGSPDI VMALVGNKAD LHEKREVPTE DGMELAEKNG MFFIETSAKT  180
ADNINQLFEE IGKRLPRPAP SS                                           202
FASTA
(Canonical)
>LipidDB-3702-01080|Q9CB01
MGCASSLPDRNSGTLSGLSNSENAVPADAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDA
TSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYSALAPLYYRGAGVAVIVYDITSPE
SFKKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPTEDGMELAEKNGMFFIETSAKT
ADNINQLFEEIGKRLPRPAPSS
MGCASSLPDRNSGTLSGLSNSENAVPADAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDA
TSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYSALAPLYYRGAGVAVIVYDITSPE
SFKKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPTEDGMELAEKNGMFFIETSAKT
ADNINQLFEEIGKRLPRPAPSS
Gene Ontology
GO:0010009; C:cytoplasmic side of endosome membrane; IDA:TAIR
GO:0005769; C:early endosome; IDA:TAIR
GO:0005768; C:endosome; IDA:TAIR
GO:0005886; C:plasma membrane; IEA:UniProtKB-KW
GO:0005525; F:GTP binding; IEA:UniProtKB-KW
GO:0003924; F:GTPase activity; IDA:TAIR
GO:0045022; P:early endosome to late endosome transport; IMP:TAIR
GO:0006897; P:endocytosis; IEA:UniProtKB-KW
GO:0006184; P:GTP catabolic process; IDA:GOC
GO:0015031; P:protein transport; IEA:InterPro
GO:0007264; P:small GTPase mediated signal transduction; IEA:InterPro
Interpro
InterPro; IPR027417; P-loop_NTPase
InterPro; IPR005225; Small_GTP-bd_dom
InterPro; IPR001806; Small_GTPase
InterPro; IPR003579; Small_GTPase_Rab_type
Pfam
Pfam; PF00071; Ras;
SMART
SMART; SM00175; RAB;
PROSITE
PROSITE; PS51419; RAB;
PRINTS
PRINTS; PR00449; RASTRNSFRMNG;